Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0484414.2a with 3 members (CTP-dependent diacylglycerol kinase)

Fungi / Dikarya / Ascomycota / saccharomyceta / Saccharomycetales / Saccharomycetaceae / Saccharomyces cerevisiae

Completeness score: 0.75

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This HOG has 25 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0484414.2a	102	46	CTP-dependent diacylglycerol kinase
2	HOG:E0475392	48	105	Phosphatidate cytidylyltransferase
3	HOG:E0484414	42	67	CTP-dependent diacylglycerol kinase
4	HOG:E0991514	32	208	phosphatidate cytidylyltransferase
5	HOG:E0390905	24	28	Phosphatidate cytidylyltransferase
6	HOG:E0145796	21	16	Dolichol kinase
7	HOG:E0802985.1b	15	5	Phosphatidate cytidylyltransferase
8	HOG:E0802985	15	19	Phosphatidate cytidylyltransferase
9	HOG:E0991514.13c	6	22	phosphatidate cytidylyltransferase
10	HOG:E0484414.2a.3a	6	2	CTP-dependent diacylglycerol kinase
11	HOG:E0991514.5d	3	1	phosphatidate cytidylyltransferase
12	HOG:E0991514.5a	3	1	phosphatidate cytidylyltransferase
13	HOG:E0991514.15b	3	1	phosphatidate cytidylyltransferase
14	HOG:E0991514.15a	3	1	phosphatidate cytidylyltransferase
15	HOG:E0855767	3	2	hypothetical protein
16	HOG:E0484414.2a.2b	3	1	CTP-dependent diacylglycerol kinase
17	HOG:E0484414.2a.2a	3	1	CTP-dependent diacylglycerol kinase
18	HOG:E0484414.2a.1b	3	1	CTP-dependent diacylglycerol kinase
19	HOG:E0484414.2a.1a	3	1	CTP-dependent diacylglycerol kinase
20	HOG:E0484414.1b	3	1	CTP-dependent diacylglycerol kinase
21	HOG:E0484414.1a	3	1	CTP-dependent diacylglycerol kinase
22	HOG:E0346397	3	2	kinase
23	HOG:E0145796.2a	3	1	Dolichol kinase
24	HOG:E0145796.1b	3	1	Dolichol kinase
25	HOG:E0484414.2a.3b	1	1	CTP-dependent diacylglycerol kinase

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